PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 463aa    MW: 50521.5 Da    PI: 8.5931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-056787323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cgk F r  nL+ H r H
  XP_013594212.1 67 CEVCGKGFQRDQNLQLHRRGH 87
                    *******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.99E-66487No hitNo description
Gene3DG3DSA:3.30.160.602.5E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.516587IPR007087Zinc finger, C2H2
SMARTSM003550.0896587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355240106136IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.99E-6136161No hitNo description
SMARTSM00355160141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MTGEVLKTVS SGSAAFAPSS STLDHDESLI NPPLVKKKRN LPGNPDPEAE VIALSPKTLM  60
ATNRFLCEVC GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE VRKRVYVCPE KTCVHHDPAR  120
ALGDLTGIKK HFCRKHGEKK WTCEKCAKRY AVHSDYKAHS KTCGTREYRC DCGIIFSRRD  180
SFITHRAFCD ALAEETAKIN AASHLNGLSA AGTVGMNLNY QYLMGTLNPP LQPFEPQPPT  240
NQNHHQHFLP PPPSSSSSLS LWMGQDIAPT SQTQPQDYEW VFANAKAASG CINNNNHNDL  300
ITQTANASST TTATLSVPSL FSSDQTQSPN ANVNMSATAL LQKAAEIGAN STTATTTNPS  360
AFLKSFPQKS SDQTTTSYGG EKFFALFGTN NNIGVVSNSH DQETENVRND VTVASAMDEL  420
QNYPWKRRKV DGGGEGGGGG QTRDFLGVGV QTLCHPSSIN GWI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594212.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9FFH30.0IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A0D3D8V00.0A0A0D3D8V0_BRAOL; Uncharacterized protein
STRINGBra033724.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.10.0C2H2-like zinc finger protein